analyze_slice_opencv

formatreader.analyze_slice_opencv(mask, z_pos: float, show_plots=False)

OpenCV implementation to obtain the contours present in the slice.

maskNumpy array

Binary array of the selected slice.

z_posfloat

Z coordinate of the selected slice.

show_plotsboolean default = False

If true, shows the contour extraction for the selected slice. Press any key to close the visualization window.

contours_zidxNumpy array

Returns the coordinates of the points of the contour (X,Y,Z).